Study immune systems
Resident-memory B cells and iBALT in influenza, plus regulatory T-cell metabolism in cancer and obesity.
Arash Bagherabadi
Small Worlds, Large Systems
I am a PhD student at UAB studying immune biology with spatial and computational methods, especially where the work can inform vaccines and immunotherapy.
What I do
I study, compute, build, and explore.
Compute across scales
Single-cell and spatial biology, including Xenium, supported by reproducible bioinformatics, machine learning, and agentic AI.
Build and communicate
Lab robotics, 3D printing, educational tools, scientific writing, and visual design.
Life beyond the lab
Running, time in nature, pickleball, miniature art, mathematics, and hands-on experiments.
Publications
Selected work.
Selected projects
Ideas made tangible.
Education
PATOQ Book
A Quarto-based learning resource that curates practical material across bioinformatics, data science, and machine learning.
Interactive app
CellRank 2 Learning Lab
An interactive app for learning how neighborhood graphs become directional transitions, macrostates, and fate probabilities.
Interactive anatomy
Mouse Lung Explorer
Explore a 3D mouse lung reference and position a section plane in the fast online preview. The full-resolution viewer adds detailed 2D sections and figure or movie exports. Measured anatomy and schematic airspaces are clearly distinguished.
