Projects
Educational Resources
PATOQ Book
A comprehensive Quarto-based online HTML book for the PATOQ project, providing curated resources for learning Bioinformatics, Data Science, and Machine Learning.
Apps
CellRank 2 Learning Lab
An interactive educational app for learning how CellRank 2 turns neighborhood graphs into directional transitions, macrostates, and fate probabilities. The lab combines a high-contrast 3D explorer, kernel intuition and formulas, Python input maps, slides, papers, notes, and runnable notebooks.
Hackathons
CM4AI CodeFest 2025
Team project from the 2025 CM4AI Hackathon at UAB focused on alternative image-embedding workflows for immunofluorescence data. The work explored cell segmentation, per-cell cropping and preprocessing, and SubCell-based inference to generate embeddings, attention maps, and class probabilities for downstream comparison with the CM4AI pipeline.
Robotics
ELISPOT Plate Reader Robot
An ongoing personal project developing a 3D-printed plate reader for ELISPOT assays with a vision language model (VLM) counter. The project is planned to be published open source and made available online in the future.
Status: In progress
Availability: Private now; planned open source release