Projects
Educational Resources
PATOQ Book
A comprehensive Quarto-based online HTML book for the PATOQ project, providing curated resources for learning Bioinformatics, Data Science, and Machine Learning.
Apps
CellRank 2 Learning Lab
An interactive educational app for learning how CellRank 2 turns neighborhood graphs into directional transitions, macrostates, and fate probabilities. The lab combines a high-contrast 3D explorer, kernel intuition and formulas, Python input maps, slides, papers, notes, and runnable notebooks.
Mouse Lung Explorer
An interactive 3D mouse-lung anatomy reference built from the M07 lung and airway meshes. The lighter online preview supports rotation and anatomical plane positioning; the full viewer adds accurate two-dimensional mesh intersections and labeled PNG, GIF, or video exports. Both distinguish source geometry from schematic airspaces and exploratory planes from specimen-specific registration.
Hackathons
CM4AI CodeFest 2025
Team project from the 2025 CM4AI Hackathon at UAB focused on alternative image-embedding workflows for immunofluorescence data. The work explored cell segmentation, per-cell cropping and preprocessing, and SubCell-based inference to generate embeddings, attention maps, and class probabilities for downstream comparison with the CM4AI pipeline.
Robotics
ELISPOT Plate Reader Robot
An ongoing personal project developing a 3D-printed plate reader for ELISPOT assays with a vision language model (VLM) counter. The project is planned to be published open source and made available online in the future.
Status: In progress
Availability: Private now; planned open source release