PATOQ

Author

Arash B. Abadi

Published

July 4, 2025

0.1 Welcome

PATOQ (پاتوق) is a curated collection of resources & quick tutorials around Bioinformatics, Data Science, ML, etc. The term “Patoq” is a Persian (Farsi) word that means “gathering place” or “social hangout”. PATOQ is a gathering place where individuals interested in bioinformatics, computational biology, data science, machine learning, and related fields can find valuable information and stay current with the latest advancements.

0.2 Table of Contents

  • Prerequisites
    • Biology Fundamentals
    • Programming Fundamentals
    • Mathematics Fundamentals
    • Statistics and Probability Fundamentals
    • Project Management and Communication Skills
    • Case Studies and Practical Applications
  • Main Sections
    • Omics Data Analysis and Interpretation
      • Genomics
      • Transcriptomics
      • Proteomics
      • Metabolomics
      • Epigenomics
      • Metagenomics
      • Network and Pathway Analysis
    • Modeling and Simulation
      • Molecular Modeling and Dynamics
      • Systems Biology
      • Computational Ecology, Evolution and Phylogenetics
      • Computational Pharmacology and Drug Design
      • Mathematical Modeling of Biological Systems
    • Integrated Platforms, Tools, and Technologies
      • Version Control: Git & GitHub
      • SaaS Platforms
      • Cloud Computing and Data Management
      • High-Performance Computing (HPC)
      • Collaborative Research Tools
      • Data Visualization Techniques
      • Big Data Analysis
    • Specialized Topics
      • Artificial Intelligence
      • Clinical Bioinformatics
      • Agricultural Bioinformatics
      • Synthetic Biology
      • Personalized Medicine
      • Environmental Bioinformatics & Epidemiology
      • Biomolecular Engineering
      • Genetic Engineering
  • Additional Resources
    • YouTube Channels
    • Persian Resources (بنمایگان پارسی)
    • Open-Source Projects and Repositories
    • Courses
    • Books
    • Scientific Journals & Publications
    • Vignettes & Websites
    • R packages
    • Miscellaneous
    • Topic Based
    • Conferences, Workshops, and Webinars
    • Career Guidance and Job Opportunities
    • Networking and Collaboration
    • Regular Updates

This book is a Quarto-based online HTML book for the PATOQ project. See CONTRIBUTING.md for more information.

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