3.2 · M07 model · NAV / Ruberte 2025

Mouse lung explorer · v3.3 Lite

Stationary ventral view. Reference lobe positions are preserved. Day 14 / 30 buttons show exploratory shape-based plane candidates, not established 3D registration.

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Lobes keep their measured positions. The two small ventral lobes can be isolated without moving them.
Scientific plane address
M07 local frame (mm): +X right, +Y ventral, +Z cranial; plane n·x = d. Direction names follow NAV terminology discussed by Ruberte et al. (2025). The origin and dimensions belong to this M07 mesh, not to Ruberte et al. or Xenium.
Alveoli / air-sac data
No individual alveolar geometry is loaded. m07 provides near-acini compartments, which are not alveolar sacs. Independent micron-scale alveolar datasets cannot be placed into m07 without registration.
m07 same-specimen data
1.1 µm alveolar ROI study
LungVis data
Section planeM07 frame · mm
mm0.00
°15°
°0°
Drag to tilt
azimuth → · elevation ↑
Slide plane
0.00 mm
M07 model plane
Oblique sagittal plane
Display
Sources · measured vs schematic

M07 reference: deposited lapdMouse gross lung and airway geometry. No measured alveolar atlas is present in this model. M07 source.

E02 measured-data ROI: independently reconstructed projection data, with exploratory thresholded tissue surfaces. Different specimen; not registered to M07. Source dataset. This is not ground-truth alveolar segmentation.

Schematic airspaces: generated enlarged polyhedra (0.40 mm diameter, 0.65 mm spacing), not acquired anatomy. Positions, dimensions and counts are illustrative. Their 2D contours are geometric cuts of these same artificial shapes. Method: alveolar notebook, versions 2.9 and 3.0. No paper is cited as evidence for these invented dimensions.

Left lung
Right cranial
Right middle
Right caudal
Right accessory
Trachea / airway
Anatomical orientation
L R V D Cr Cd
Ventral view. Mouse left appears on the right side of the image; cranial points up.
R / L · Right / Left
V / D · Ventral / Dorsal
Cr / Cd · Cranial / Caudal
Ventral view: screen-left = mouse RIGHT lung · screen-right = mouse LEFT lung
Loading Lite lung model…
Preparing 3D engine