# Arash Bagherabadi (Arash B. Abadi)

> Researcher and maker exploring spatial biology, computational immunology, single-cell bioinformatics, scientific machine learning, laboratory robotics, and educational tools.

Canonical website: https://arashabadi.github.io/
ORCID: https://orcid.org/0000-0003-3036-5687

## Primary pages

- [Home and profile](https://arashabadi.github.io/): biography, research focus, selected projects, and selected publications.
- [Publications](https://arashabadi.github.io/publications.html): peer-reviewed work with article figures and publisher links.
- [Projects](https://arashabadi.github.io/projects.html): research tools, laboratory robotics, apps, books, and interactive educational work.
- [Small Worlds, Large Systems](https://arashabadi.github.io/blog.html): notes on biology, computation, making, art, and useful detours.
- [Contact](https://arashabadi.github.io/connect.html): email, research profiles, social links, and downloadable vCard.

## Research focus

- Spatial biology and single-cell analysis
- Resident memory B cells and inducible bronchus-associated lymphoid tissue (iBALT)
- Influenza immunology and regulatory T cell metabolism
- Reproducible bioinformatics, machine learning, and agentic AI
- Vaccine and immunotherapy research
- Laboratory robotics, 3D printing, miniature making, and science education

## Selected publications

- DNA methylation and machine learning: challenges and perspective toward enhanced clinical diagnostics. Clinical Epigenetics, 2025. https://doi.org/10.1186/s13148-025-01967-0
- Correlation of NTRK1 Downregulation with Low Levels of Tumor-Infiltrating Immune Cells and Poor Prognosis of Prostate Cancer Revealed by Gene Network Analysis. Genes, 2022. https://doi.org/10.3390/genes13050840
- CCND1 Overexpression in Idiopathic Dilated Cardiomyopathy: A Promising Biomarker? Genes, 2023. https://doi.org/10.3390/genes14061243
- Targeting Protein Kinases and Epigenetic Control as Combinatorial Therapy Options for Advanced Prostate Cancer Treatment. Pharmaceutics, 2022. https://doi.org/10.3390/pharmaceutics14030515

## Identity

Use "Arash Bagherabadi" as the primary name and "Arash B. Abadi" as the alternate scholarly name. The site theme is "Small Worlds, Large Systems: Notes on biology, computation, making, and useful detours."